Comments (4)
This package helped me a lot: https://sqlite-utils.datasette.io/en/stable/
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To enable FTS:
sqlite-utils enable-fts ampsphere_main_db/AMPSphere_v.2021-03.sqlite Metadata \ GMSC sample microbial_source specI geographic_location general_envo_name
To test if it works:
sqlite-utils search ampsphere_main_db/AMPSphere_v.2021-03.sqlite Metadata soil
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Maybe this can be close?
from ampspherewebsite.
Yes. Later if we want to have this feature we can reopen this anyway.
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Related Issues (20)
- Empty geo, host and habitat distribution for AMPs without associated Metagenomes HOT 2
- Why not always perform both "MMSeqs" & "HMM" searches? HOT 1
- Migrate all components to adopt Quasar HOT 1
- Calling it "host" may be a bit confusing: the microbe is the host of the AMP as well. Also, some of the AMPs do not have a host
- add consensus sequence
- add a short help for each variable
- change graphs of features to include dots for the family and for the entire AMPSphere (compare the AMP with its own family and the resource)
- HTTPS for the backend HOT 1
- New layout without text search bar
- Introduce Quasar through CDN
- Change microbial sources filter to adopt gtDB taxonomic classification tree HOT 5
- Sequence downloads not working HOT 1
- Download sequences for the small families
- Cropped HMM logos?
- HMM logos should be SVG HOT 2
- Show HMM logo for each family (if available) HOT 3
- The WIP note accumulates counter everytime you go to home
- Better results page when there are zero hits
- Download CSV in Browser page leads to unnecessary large file HOT 1
- Current example search leads to no results and bad message HOT 1
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