Comments (1)
Thanks for the feedback. As you noted, cellhashR is pretty liberal with plots as it works through the data. That's largely on purpose (these data are complex and more information can help debug), but I see your point. I cant promise a specific timeline, but we'll try to add something like this.
Note: while I agree it would be nice to add this flag to cellhashR, I wonder if there's an R or Rmarkdown-level flag to suppress plots? Quickly googling this, would any of these help you? https://bookdown.org/yihui/rmarkdown-cookbook/hide-one.html
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Related Issues (19)
- If path finish with "/", ProcessCountMatrix doesn't work HOT 2
- AppendCellHashing: Error in file.exists(barcodeCallFile) : invalid 'file' argument HOT 2
- Multiseq have error and CallAndGenerateReport HOT 17
- Error in GenerateCellHashingCalls(barcodeMatrix = hashtag_counts, methods = methods) : Unknown method: bff_threshold HOT 2
- Changing positive quantile for HTODemux HOT 2
- Can plots from GenerateCellHashingCalls automatically be saved to pdf? HOT 8
- Error running demuxEM - h5py.h5o.open" [29] "KeyError: \"Unable to open object (object 'shape' doesn't exist) HOT 3
- Control memory and core usage? HOT 4
- do i provide HTO couts from the filterered or raw cellranger outputs HOT 5
- Error in barcodeData; Incorrect number of dimensions HOT 5
- GenerateCellHashingCells not recognising rawFeatureH5 HOT 2
- Error and fail for CallAndGenerateReport HOT 7
- Object 'normedres' not found HOT 1
- seurat hto demux fails when i run GenerateHashingCalls with demuxem and htodemux HOT 2
- No HTO/GEX overlap in demuxmix HOT 7
- Crashdown while run HOT 3
- Seurat version and multiseq error HOT 3
- Cran availability HOT 2
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