bio-mingchen Goto Github PK

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-foundation-model-single-cell-papers

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

awesome-reproducible-analysis-of-single-cell-papers

A curated list of awesome reproducible papers in single-cell omics

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bio-mingchen

Config files for my GitHub profile.

bioinformatic_practices

Common exercises of bioinformatics mainly about Sequncing tech and data analysis

celltypist

A tool for semi-automatic cell type annotation

crawling-python

A project for crawling disease information of description by using multithreading and proxy in python3

django_user_auth

customized django registration system

hlatools

This project is made for HLA(human leukocyte antigen) analysis

howdoi

instant coding answers via the command line

infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

linux_code_examples

Records of commonly and effectively Linux commands and scripts with active examples

myresume

My blog

novoalgor

An innovative algorithmic for single-cell celltype assignment and visualization

py-googletrans

(unofficial) Googletrans: Free and Unlimited Google translate API for Python. Translates totally free of charge.

python_best_practice

Best practices when using python to basic usage,data science or web building

react_test

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

scanpy_recipe

shortcut tools for scRNA-seq data analysis based on scanpy

single-cell-algor

Single cell sequencing data analysis algorithms exploration

single_cell_integration

Pipeline for single cell integration

singlecell-workshop-2021

Module 4 for HKU Single-cell Workshop

somatic_calling

Scripts for Somatic variants Calling

teacheng

A Teaching Engine for Genomics

training-collection

Collection of bioinformatics training materials

utilities

A lot of common and useful tools and functions

variantsvisulization

Plotting Variants(snv,indel,CNV,SV) called in Next Generation Sequencing(NGS)or Third Generation Sequencing