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Biodiversity Atlas Sweden's Projects

access2csv-docker icon access2csv-docker

Dockerized tool for extracting data from the MS Access file format into CSV

ala-cas-2.0 icon ala-cas-2.0

ala-cas-2.0 based on https://github.com/mbohun/jasig-cas-4.0.1-overlay-template AND new design http://iamadamatteia.com/ala-login-2

ala-collectory icon ala-collectory

A collectory application based on collectory plugin for ALA team.

ala-docker icon ala-docker

Dockerized version of Atlas of Living Australia components

ala-hub icon ala-hub

ALA version of the biocache-hubs webapp

ala-install icon ala-install

Ansible playbooks for installing the ALA components

amplicon-wf icon amplicon-wf

A workflow for read-correction based annotation of amplicon reads

ampliflow icon ampliflow

An automatic workflow for amplicon denoising and taxonomy assignment

ampliseq icon ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

configs icon configs

Config files used to define parameters specific to compute environments at different Institutions

data-mobilization-pipeline icon data-mobilization-pipeline

Various tools and examples to support reproducible workflows when migrating data or mobilizing data into various standard formats (.csv, .DwcA etc)

dyntaxa icon dyntaxa

R package providing access to Dyntaxa - a database of Swedish taxonomic names

gbifse-ghost icon gbifse-ghost

A minimal, responsive, fast ghost blog theme with great typography. Comes with Disqus comments, syntax highlighting, and KaTeX for mathematics, and more.

ghost-docker icon ghost-docker

Dockerized system integration project based on the Ghost (https://ghost.org/) publishing platform - a testbed for the BioAtlas front-end web portal

iceland-flora icon iceland-flora

Student project to parse web site with Icelandic Flora into Darwin Core Archive format

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