BioBuilds's Projects
Tools for common BAM file manipulations
Curated collection of open-source bioinformatics tools
XS-based BioPerl extensions to C libraries (defunct)
A fast and sensitive gapped read aligner
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
The final version 2 release of our software to detect core genes in eukaryotic genomes
Automatically exported from code.google.com/p/chimerascan
BioBuilds-related Docker images and utilities
FASTA/FASTQ pre-processing programs
Official code repository for GATK versions 4 and up
Gordon's Text utils Library
ncbi-vdb
NGS Language Bindings
De novo transcriptome assembler for short reads
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
Next generation sequencing reads de novo assembler.
SRA Tools
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities