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ab-bind-database

Antibody Binding Mutational Database

abagintpre

AbAgIntPre webserver source code

abgnn

PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"

ablm

Protein language model customized for antibodies

absolut

Unconstrained lattice antibody-antigen bindings generator

ankh

Ankh: Optimized Protein Language Model

antiberta

Public repository describing training and testing of AntiBERTa.

antibody-2019

antibody_benchmark

Antibody-Antigen Docking and Affinity Benchmark

antibody_deep_learning

Code for the antibody deep learning paper.

antiref

AntiRef: reference clusters of human antibody sequences

awesome-ai-based-protein-design

A collection of research papers for AI-based protein design

awesome-protein-analysis-on-aws

A curated list of resources for protein analysis on AWS

bert

TensorFlow code and pre-trained models for BERT

bio-datasets

Free collection of Bio datasets and embeddings

bio_embeddings

Get protein embeddings from protein sequences

biomodellingtutorials

biophi

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.

biotrainer

biotransfer

Machine learning-driven antibody design

chroma-pytorch

Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

colabdesign

Making Protein Design accessible to all via Google Colab!

convnext

Code release for ConvNeXt model

course-nlp

A Code-First Introduction to NLP course

deepaai

DeepAAI

deepab

Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.

deepdrugdomain

DeepDrugDomain: A versatile Python toolkit for streamlined preprocessing and accurate prediction of drug-target interactions and binding affinities, leveraging deep learning for advancing computational drug discovery.

design_tools

A compilation of deep learning methods for protein design

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

dms_opt