Comments (4)
It appears that it's actually libxt-dev
that is missing and stops Cairo
to install. I hope to get that fixed soon and send a PR that fixes the proteomics2
containers.
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My initial feeling is that it should be added in your docker script. The base packages don't need this dependency nor do any of the packages we have on our core container; so it feels more appropriate to add it where it is being used.
@mtmorgan thoughts? Maybe it should be added to base?
from bioc_docker.
Ok, I'll add it to the proteomics
container. If there's interest, I'll make the change wherever is useful.
from bioc_docker.
+1 lib*-dev should be as late as possible, but that might be in a parent container
(almost) all of its children require it, and if the task of that intermediate container
is to accumulate as much common stuff between its children. Just my 2c, Steffen
from bioc_docker.
Related Issues (20)
- devel_proteomics build cancelled due to timeout HOT 7
- devel_mscore2
- release_protmetcore HOT 1
- Mounted volume for site library HOT 7
- install libpng-dev HOT 3
- devel_metabolomics2 cancelled for timeout
- add new cytometry container HOT 8
- release metabolomics fails - R 3.5.3 Bioc 3.8 HOT 2
- devel_metabolomics2 fails due to BiGGR HOT 1
- devel_mscore2: ChemmineR half-failure
- devel_mscore2: BiocVersion not available for R-devel HOT 7
- devel_mscore2: proFIA fails to byte-compile and prepare package for lazy loading HOT 2
- devel_mscore2: ChemminerOB fails to build
- Update for Release 3.9 HOT 1
- proteomics: Rchemcpp fails due to staged install HOT 2
- release_proteomics and devel_proteomics docker fail - Deprecate docker? HOT 1
- bioconductor/devel_base2:latest image -- libssl1.0.2 issue HOT 7
- Can't use R_LIBS_USER because they are overridden in .Renviron HOT 5
- Failed attempt to run docker for deseq2 HOT 1
- inconsistent tag names HOT 1
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