Comments (1)
Taken care of in VariantAnnotation 1.43.3 (see commit 505509c).
from variantannotation.
Related Issues (20)
- locateVariants returns genes from both Forward and Reverse strands in PRECEDEID and FOLLOWID HOT 3
- Files do not exist error HOT 3
- Converting VCF --> data.table HOT 18
- Speed up `readVcf` HOT 16
- Populate INFO column with VariantAnnotation::writeVcf HOT 4
- predictCoding with incorrect predictions HOT 1
- writeVcf Output Causes IGV Errors from htsjdk HOT 5
- Error message from predictCoding () HOT 1
- backward compatibility of info() function HOT 12
- Unable to load vcf file HOT 7
- readVcf is Slow if ScanVcfParam which Regions is Lengthy HOT 3
- readVcf error: if (NROW(flesh) != flesh_len2) stop("shape of 'skeleton' is not compatible with 'NROW(flesh)'") HOT 6
- expand Error data is NULL
- Memory Error for readGeno but not for readVcf HOT 5
- locateVariant from VariantAnnotation returns wrong results HOT 1
- readVcf(), VariantAnnotation and shiny compatibility HOT 1
- Faithfully recapitulate metadata via a round-trip through `writeVcf` + `readVcf`. HOT 4
- Convert `Number=A` to `Number=1` when creating an `ExpandedVCF` HOT 5
- `readVcf` doesn't handle quoted `=` in `hapmap_exome_chr22.vcf.gz` correctly HOT 8
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