bioinfodlsu Goto Github PK

.github

attack_amr

Source code for analysis of hospital wastewater metagenomic data

attack_amr_pipeline

Bioinformatics pipeline for profiling anti-microbial resistance genes from hospital wastewater

bioinfodlsu-survival-guide

Collection of reference material for FAQ from members/applicants of Bioinformatics Lab, DLSU Manila

bioinfodlsu.github.io

Website of the Bioinformatics Lab at DLSU Manila

hiv_hts_pipeline

A Snakemake pipeline for drug-resistance profiling using HIV whole-genome NGS data

phage-host-prediction

Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences

regulated_cell_death

rice-pilaf

Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases

samar

Samar is a pipeline for speedy, assembly-free differential gene expression analysis in non-model organisms.

samar_lite

Quick-and-dirty differential gene expression analysis pipeline that avoids computationally demanding de-novo transcriptome assembly