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1000_genomes_examples

Examples using R and 1000 genomes data

aflf_timecourse_control

ancestry

program to estimate admixture coefficients from individual genotype or sequence data

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

backup_dc

bookdown-minimal

An absolutely minimal bookdown example

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

d3-china-map

A template to create map of China by province using d3js

deep-neural-networks-healthcare

Tangible and Practical Deep Learning Projects Repository for Healthcare such as Cancer, Drug Discovery, Genomic and More

deeptools

Tools to process and analyze deep sequencing data.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

epic

epic: diffuse domain ChIP-Seq caller based on SICER

ethnicity_inference_450k

foundation-theme

Core theme files for Hugo Foundation.

geneticancestry

23andme playtimes, mostly

gganimate

Create easy animations with ggplot2

ggplot2_training_cn

ggpubr

'ggplot2' Based Publication Ready Plots

hugo-academic

The personal website framework for Hugo. Demo at

igv-snapshot-automator

Script to automatically create and run IGV snapshot batchscripts

intervene

machine_learning_note

metagenomics-workshop

Metagenomics Workshop

methylpy

methylpy is a whole genome bisulfite sequencing analysis pipeline. It is developed by Mattew D. Schultz.

omicspls

R package for High dimensional data analysis and integration with O2PLS!

oz_backup

pacbiotosra

Take a list of Pacbio files (.fofn) and creates a spreadsheet for data submission to the sequuence read archive (SRA)

penn-ml-benchmarks

A large, curated repository of benchmarks for evaluating supervised machine learning algorithms.

rcode4teaching

R code that I use for teaching and illustration of population genetic concepts.

resouces4reproducible_research