biomathsys Goto Github PK

bifurcation-analysis

This code is written in Maple and help us to analyze the changing behavior of system as one, two parameters are being varied.

cobrapy

COBRApy is a package for constraint-based modeling of biological networks

dfg

A LaTeX template for a basic DFG (Deutsche Forschungsgemeinschaft, German Research Foundation) grant proposal.

dpm-sau-in-hsa-nose

This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.

elements-of-style-reproducible-workflow-creation-maintenance-tutorial

integrated_bioinformatics

jsbml

JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.

masschargecuration

Python module to automatically curate the mass and charge assignments for metabolites in a metabolic model.

ncmw

A metabolic modeling workflow for communities of organisms in an nasal medium.

pymcadre

pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

python_project_summerschool2018