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Zhang (Frank) Cheng's Projects

ataccnv icon ataccnv

A tool to call CNV (Copy Number Variation) from bulk ATAC-Seq data

awesome icon awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-single-cell icon awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

basset icon basset

Convolutional neural network analysis for predicting DNA sequence activity.

bcbio-nextgen icon bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bio-cwl-tools icon bio-cwl-tools

CWL CommandLineTool descriptions for biology/life-sciences related applications

cancerlocator icon cancerlocator

A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.

cer icon cer

A R package for Illumina BaseSpace Correlation Engine (CE) API

dada2 icon dada2

Accurate sample inference from amplicon data with single nucleotide resolution

deseq2 icon deseq2

Differential gene expression analysis based on the negative binomial distribution

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