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acertacentavo

atom

:atom: The hackable text editor

blastigv

Convert BLAST output to a .bed track for IGV

chitoqc

Chip Topology QC for Ion Proton chips

clinker_env_recipe

Simple working recipe for a conda env for Clinker dependencies,`conda install clinker` was taking too much.

compare_ref

Compare two reference fasta files.

covid19seq

Filter and align public SARS-CoV-2 sequences

ega-download-client

A basic Python-based EGA download client

fastqcplugin_unofficial

filter_gisaid

Filter and summarize data from GISAID

fishcounter

GUI software for manual signal counting in fluorescence in situ hybridization

ionqc

Creates a quality control report for Ion Torrent-generated exome data. Information is mostly retrieved via Torrent Suite API calls.

koboextract

Extract data from KoboToolbox surveys

lockdata

Two simple scripts to protect data from accidental operations.

lucia_tiff

A simple pyautogui script to edit multiple-image TIFFs

nclocdata

Scrape and use Nexus Clash location data.

popfreq

Show population frequency tables from Ensembl data

processing_scripts

Processing scripts for NGS data

qualiscompare

recursivesearch

rename_exomes

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

servercheck

somatic_pipeline

[Google Translate] Tumor somatic mutation detection process (tissue, cfDNA, need to have a control)

summarize_review_sources

A small script to join pubmed, scopus, web of science and embase data

summarizecnv

Simple script to summarize data from CNVfinder

swot

Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.

symcheck

Check for the existence of gene symbols in RefSeq and HGNC databases and suggest aliases

targetsqc

tracy

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files