Missing file: find-ebola-variants.sh about biostar-handbook HOT 3 CLOSED

The issues have been fixed.

from biostar-handbook.

Just a small follow up on the issue:
The text after the fixed link in Variant effect prediction is not correct as it states that the script needs to be edited to modify the accession number. The accession number is given as a parameter on the command line so no editing is needed.
In addition, for running the annotation after the script the command snpEff ebola_zaire samples.vcf > annotated.vcf is suggested. The script will produce a vcf file for each run and one for all runs combined: SRR19729[17,18,19,20,21].vcf and combined.vcf. None is called samples.vcf. It is quite obvious what is meant but may be confusing for a newbie trying to learn.

from biostar-handbook.

Indeed, inconsistencies do creep in. Thanks for reporting. The changes have been made.

from biostar-handbook.