Comments (1)
newgene
commented on May 30, 2024
@acoffman my reply at #20 should also apply here. Basically, we have a very old version of Cosmic due to license restriction.
And I have also verified that "COSM1430077" is indeed coming from UCSC cosmic and cosmicRaw tables:
❯ zgrep COSM1430077 cosmic.txt.gz
1005 chr4 55141035 55141036 COSM1430077
❯ zgrep COSM1430077 cosmicRaw.txt.gz
COSMIC v68 COSM1430077 PDGFRA ENST00000257290 Substitution - Missense c.1682T>C p.V561A 4 551410355141036 t>c V>A large_intestine 1 725 .14
from myvariant.info.
Related Issues (20)
- `src/utils` code cleaning
- Apply new asyncio syntax and API HOT 1
- Upgrade to PyMongo 4.2 HOT 1
- fix outdated command "rebuild_cache" HOT 1
- ssl error in logger
- Investigate the warning of `Can't find information for target collection 'superhot_hg19_xxx'`
- `MyVariantDifferManager` object has no attribute `release_note`
- Update python versions in `local_web_tests.yml` HOT 1
- Missing gnomAD data
- docm field formatting
- Cannot aggregate by "chrom" field
- superhot build docs lost `index.<build_id>.host` and `index.<build_id>.environment` fields HOT 1
- Revise dbNSFP plugin for v4.4 HOT 1
- dbNSFP document-merging problems HOT 2
- How to get annotations for hg38 variants HOT 2
- index all `clinvar.rcv.conditions.identifiers` fields, including mondo and mesh HOT 1
- report all REVEL scores from dbNSFP HOT 1
- Data source: AlphaMissense
- Add CURIE ID support for some myvariant identifiers
- dbNSFP list order is not maintained
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from myvariant.info.