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admixtools

Tools test whether admixture occurred and more

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

bioscripts

a bucket of bioinformatics scripts

cactus

Official home of genome aligner based upon notion of Cactus graphs

distribution-is-all-you-need

The basic distribution probability Tutorial for Deep Learning Researchers

duck_comp_gen

Comparative genomics of obligate brood parasite and closely related species in Anatidae

friendsdontletfriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

gelada-genome

genomegtftools

convert various features into a GFF-like file for use in genome browsers

ilus

A handy pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis.

linked-selection

orthofinder

Phylogenetic orthology inference for comparative genomics

pure-bash-bible

📖 A collection of pure bash alternatives to external processes.

pure-bash-bible-zh_cn

📖 一个纯bash实现外部命令的脚本集合（中文版）【翻译自pure-bash-bible仓库】

ratite-genomics

Scripts and other material for the assembly and analysis of ratite genomes.

sd-genome

Identification of segmental duplications in the genome

slurm-k-mer-gwas

k-mer-based GWAS on SLURM cluster

specifications

GFF and GVF specification documents

teanalysis

Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.

the-art-of-command-line

Master the command line, in one page

tutorials

Tutorials on phylogenetic and phylogenomic inference

twisst

Topology weighting by iterative sampling of sub-trees

unimap

A fork of minimap2 optimized for assembly-to-reference alignment

vcfstats

Powerful statistics for VCF files

wild_duck_project