Related Issues (20)
- Make the pipeline a required argument and remove the --pipeline flag HOT 1
- Modules in the pipeline script's directory can't be imported when it is called via rubra HOT 1
- Add an example pipeline that makes use of the config files
- Putting too many steps out of order results in an error that is not usually seen in Ruffus
- Allow module loading for non-distributed jobs HOT 1
- Support SLURM job scheduler HOT 2
- Allow config file to be in different directory to pipeline file
- save a separate shell script for each submitted job
- Generate other image format types for flowchart
- Use shlex.split to parse srun command line
- handling of full paths in command line
- example doesn't run out of the box HOT 1
- Trouble install directly from pip HOT 1
- Rubra RedDog error HOT 1
- Make Rubra an installable package in the normal Python way. HOT 1
- Investigate the use of DRMAA to submit jobs to clusters. HOT 2
- Make the installed rubra package executable as a script from the user's path HOT 2
- Add touchfiles as an option alongside print, run, flowchart HOT 2
- The default of rebuild appears to actually be fromstart (which I would expect) ? But docs say it is fromend. HOT 1
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from rubra.