Comments (2)
It's not possible with the current design because the config is not sufficiently generalized to include arguments for the features:
{'neurite': {'max_radial_distance': ['min', 'max', 'median', 'mean', 'std'],
'number_of_segments': ['min', 'max', 'median', 'mean', 'std'],
'number_of_sections': ['min', 'max', 'median', 'mean', 'std'],
'number_of_bifurcations': ['min', 'max', 'median', 'mean', 'std'],
'number_of_forking_points': ['min', 'max', 'median', 'mean', 'std'],
'number_of_leaves': ['min', 'max', 'median', 'mean', 'std'],
...
'principal_direction_extents': ['min', 'max', 'median', 'mean', 'std'],
'section_strahler_orders': ['min', 'max', 'median', 'mean', 'std']},
'morphology': {'soma_volume': ['min', 'max', 'median', 'mean', 'std'],
'soma_surface_area': ['min', 'max', 'median', 'mean', 'std'],
...
'circularity': ['min', 'max', 'median', 'mean', 'std'],
'shape_factor': ['min', 'max', 'median', 'mean', 'std']},
'population': {'sholl_frequency': ['min', 'max', 'median', 'mean', 'std']},
'neurite_type': ['AXON', 'BASAL_DENDRITE', 'APICAL_DENDRITE', 'ALL']}
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For the records, I think you are speaking about this:
https://neurom.readthedocs.io/en/stable/morph_stats.html#kwargs-format-starting-version-3-0-0
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Related Issues (20)
- Maximal direction extent HOT 2
- New feature: aspect ratio HOT 2
- New feature: circularity HOT 1
- New feature: shape factor HOT 1
- NeuroM "get" does not list features in help.
- New feature: percentage of neuronal mass with respect to soma HOT 3
- `neurom.load_morphologies` does not resolve paths
- Features should return consistent types HOT 2
- Cannot .get Features from any .swc reconstruction done with neuTube HOT 6
- Error loading h5 : Missing points or structure datasets, cannot load morphology without them HOT 10
- How can I get all the features results in the simple way? HOT 1
- Raise more informative error when a morph has no soma
- Upload releases to conda-forge? HOT 4
- Local bifurcation angle computation fails when a section has only one point HOT 6
- Broken call to Rectangle constructor HOT 2
- Cannot install NeuroM on macOSX. HOT 4
- example with "soma_radii" is outdated.
- load_morphology(path).sections throws error HOT 3
- 3.2.7: use of `pkg_resources` is deprecated HOT 2
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