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abo-analysis

Analysis of ABO MinION sequences

alignment_scripts

Commonly used small scripts that I like to keep handy.

allele-wrangler

For Wrangling HLA Alleles

alternativesplicinganalysis

Analysis and Quantification of Alternatively Spliced MinION cDNA Reads using GMAP

barcode-demultiplexer

A tool for searching for barcode sequences in MinION reads

bens-website

compgraphicsfall2015

converters

hml and haml converter repo

cookiecutter-pypackage

Cookiecutter template for a Python package.

crispr-screen-analysis

dash

Data Standards Hackathon for NGS based typing.

dp-outcome-analysis

epitope-demo

Sample files and instructions for a live PIRCHE and HLA-EMMA demo

fastqe

FASTQ sequence quality visualisation with Emoji

gfe_client

Python client for working with the ACT service

haml

HLA Antibody Markup Language - For antibody assay results and expert interpretation

hla-allele-analysis

Tools for parsing the IMGT HLA database and generating reference sequences for later use

hml-parser

A script for parsing an hml document and returning some plain-text sequence information

ihiw_converter_py

HAMLConverter_py

imgthla

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

immunogenicepitopes

minion-barcode-decoder

Tool for searching for barcodes in MinION fast5 reads.

minion-extractor-cl

Command line tools for FAST5 data extraction

minion_extractor

MinION extraction scripts

nanopore-prospector

GUI Interface for analysis of MinION nanopore reads of HLA amplicon sequences

nit-picker

A tool for preparing fastq reads from MinION. Combine reads, Generate read quality stats, and possibly demultiplex

nmdp-python-project-template

Python project template for NMDP Bioinformatics

old_code

I keep a graveyard of some old code.

pirche-ii-overlap

pirche-scripts

Some Scripts for PIRCHE