bmengineer Goto Github PK

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bmbl-notebooks

bmengineer.github.io

my github page

bulkrna-seq

BulkRNAseq pipeline

celltypeprediction

R script for cell type prediction based on CellMarker database and hypergeometric test

desso

A DL-based framework for sequence and shape motif identification in the human genome

geomxbatchcorrection

GeoMX data batch correction example

gmb_analysis_lilab

The code demonstrate the analysis for glioblastoma GBM analysis

iris-cem

iris-fgm-image-pool

iriscem

developed IRIS-CEM, integrative and interpretation system for co-expression module analysis. IRIS-CEM contains four major steps: (i) data preprocessing and regulatory signal modeling; (ii) co-expression gene module identification; (iii) cell clustering; (iv) co-expression module and differentially expressed gene analysis.

irisfgm

Development repository for the IRISFGM package for submission purposes

irisfgm-data

This link provide data for supplementary file

methylation

Methylation Pipeline

midashla

R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.

online_r_learning

Online R learning for applied statistics

scgnnltmg

LTMG for scGNN

scrna-seq-notebook

sex-bias-in-cancer-scienceimmunology-2022

This is for paper submission

single_cell_spatial_image

spatalk

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

sscrna-viz

Visualization application for spatially structured single-cell RNA-seq data

trendsceek

Identify genes with spatial expression trends in single-cell gene expression data

vue3-template