PyNMRStar fails to install with pip on centos 7.x about pynmrstar HOT 6 CLOSED

Hi Jon Ok that fixes it. I was using the python distro inside ccpn assign to install it this time (it includes a install_nef_pipelines script) I will also have a check what happens with the local centos python installation Would the answer be to tell the users to install the latest pip and this will bring in the latest setup tools with it and be a bit less hack and better for them overall? regards Gary Dr Gary S Thompson NMR Facility Manager Wellcome Trust Biomolecular NMR Facility CCPN CoI & working group member School of Biosciences, Division of Natural Sciences University of Kent, Canterbury, Kent, England, CT2 7NZ ☎:01227 82 7117 ✉️: ***@***.*** orchid: orcid.org/0000-0001-9399-7636 On 4 Mar 2024, at 15:50, Jon Wedell ***@***.***> wrote: You don't often get email from ***@***.*** Learn why this is important<https://aka.ms/LearnAboutSenderIdentification> CAUTION: This email originated from outside of the organisation. Do not click links or open attachments unless you recognise the sender and know the content is safe. Could you check something for me? Can you first install/upgrade wheel and setuptools: pip install --upgrade wheel setuptools and then try the install again? I'm shipping binaries in addition to source, so ideally you shouldn't need to build cnmrstar at all. — Reply to this email directly, view it on GitHub<#121 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AA3UD6KUNNLTSKTUSHH47NDYWSJ47AVCNFSM6AAAAABEFNWWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNZWHA4TGNZUGA>. You are receiving this because you authored the thread.Message ID: ***@***.***>

Hi Seems like a sensible patch it doesn’t make the c much uglier but it is more portable... of course there maybe more c99isms present, I haven’t checked further regards Gary Dr Gary S Thompson NMR Facility Manager Wellcome Trust Biomolecular NMR Facility CCPN CoI & working group member School of Biosciences, Division of Natural Sciences University of Kent, Canterbury, Kent, England, CT2 7NZ ☎:01227 82 7117 ✉️: ***@***.*** orchid: orcid.org/0000-0001-9399-7636 On 4 Mar 2024, at 17:02, dmaziuk ***@***.***> wrote: You don't often get email from ***@***.*** Learn why this is important<https://aka.ms/LearnAboutSenderIdentification> CAUTION: This email originated from outside of the organisation. Do not click links or open attachments unless you recognise the sender and know the content is safe. They may have an older glibc, too, if they have a pre-c-99 gcc, in which case the prebuilt binary could fail to load. { int I; (for I ... } should make that last-century-proof (in squigglies if you need to limit the I's scope to the for loop) — Reply to this email directly, view it on GitHub<#121 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AA3UD6JHNO6EUMNRF35ELS3YWSSJRAVCNFSM6AAAAABEFNWWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNZXGA2TKNRUGE>. You are receiving this because you authored the thread.Message ID: ***@***.***>

Hi Jon so doing a python -m pip install —upgrade pip Works as well But I am certainly not compatible with default python3 on centos and you also need root access to install regards Gary Dr Gary S Thompson NMR Facility Manager Wellcome Trust Biomolecular NMR Facility CCPN CoI & working group member School of Biosciences, Division of Natural Sciences University of Kent, Canterbury, Kent, England, CT2 7NZ ☎:01227 82 7117 ✉️: ***@***.*** orchid: orcid.org/0000-0001-9399-7636 On 4 Mar 2024, at 15:58, Gary Thompson ***@***.***> wrote: Hi Jon Ok that fixes it. I was using the python distro inside ccpn assign to install it this time (it includes a install_nef_pipelines script) I will also have a check what happens with the local centos python installation Would the answer be to tell the users to install the latest pip and this will bring in the latest setup tools with it and be a bit less hack and better for them overall? regards Gary Dr Gary S Thompson NMR Facility Manager Wellcome Trust Biomolecular NMR Facility CCPN CoI & working group member School of Biosciences, Division of Natural Sciences University of Kent, Canterbury, Kent, England, CT2 7NZ ☎:01227 82 7117 ✉️: ***@***.*** orchid: orcid.org/0000-0001-9399-7636 On 4 Mar 2024, at 15:50, Jon Wedell ***@***.***> wrote: You don't often get email from ***@***.*** Learn why this is important<https://aka.ms/LearnAboutSenderIdentification> CAUTION: This email originated from outside of the organisation. Do not click links or open attachments unless you recognise the sender and know the content is safe. Could you check something for me? Can you first install/upgrade wheel and setuptools: pip install --upgrade wheel setuptools and then try the install again? I'm shipping binaries in addition to source, so ideally you shouldn't need to build cnmrstar at all. — Reply to this email directly, view it on GitHub<#121 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AA3UD6KUNNLTSKTUSHH47NDYWSJ47AVCNFSM6AAAAABEFNWWYCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNZWHA4TGNZUGA>. You are receiving this because you authored the thread.Message ID: ***@***.***>