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Bo Chen's Projects

flas icon flas

Fast and High Throughput Algorithm for PacBio Long Read Self-Correction

flashx icon flashx

FlashX is a collection of big data analytics tools that perform data analytics in the form of graphs and matrices.

hsds-upcxx icon hsds-upcxx

hierarchical clustering of DNA sequence using upcxx

lrece icon lrece

Long read error correction evaluation

mecat icon mecat

MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads

menu-api-demo icon menu-api-demo

A demonstration of API design using FastAPI and ElasticSearch

pbsim2 icon pbsim2

PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores

procgen icon procgen

Procgen Benchmark: Procedurally-Generated Game-Like Gym-Environments

pyoslom icon pyoslom

Python binding for OSLOM graph clustering algorithm

yahooquery icon yahooquery

Python wrapper for an unofficial Yahoo Finance API

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