booew Goto Github PK
Name: booew
Type: User
Company: Shanghai Children's Medical Center
Bio: PhD of Zoology
Location: Shanghai
Name: booew
Type: User
Company: Shanghai Children's Medical Center
Bio: PhD of Zoology
Location: Shanghai
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java framework for processing biological data.
Notebooks to introduce biopython
Practical Data Science with Ruby based tools.
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
An Emacs framework for the stubborn martian hacker
Probability and Statistics Using Python Data Science Masters Course at UCSD (DSE 210)
Eigen tools by Nick Patterson and Alkes Price lab
elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
GRIDSS: the Genomic Rearrangement IDentification Software Suite
《线性代数及其应用》笔记
Lollipop-style mutation diagrams for annotating genetic variations.
Single-cell Transcriptome and Regulome Analysis Pipeline
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
R package for MetaboAnalyst
The Nimbus software suite for the analysis of amplicon based NGS data
Jupyter Notebooks for Computational Linear Algebra course, taught summer 2018 in USF MSDS program
Useful bash one-liners for bioinformatics.
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
Source code for R in Action, Second Edition
A repository for setting up a RNAseq workflow
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Common data structures and algorithms in Rust
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
a framework for training sequence-level deep learning networks
Course material in notebook format for learning about single cell bioinformatics methods
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.