Comments (1)
The coverage reported is excluding assembly gaps (and this is how it is described in the figure legend). For simplicity the blacklist regions span over the very large centromere and telomere gaps, but we don't think including those genomic regions in the coverage calculation gives a good feel for how small a portion of the genome is actually blacklisted.
from blacklist.
Related Issues (20)
- Compiling on Mac
- Ubuntu issue HOT 5
- Installation issues in Mac HOT 3
- Question for WES HOT 3
- other species have blacklists? HOT 2
- Request: Could you please create a blacklist file for the latest mouse genome version (GRCm39)? HOT 10
- A little confused about the input files. HOT 2
- error: unrecognized command line option ‘-std=c++14’ HOT 2
- discrepancy between hg38-blacklist.v2.bed and hg38 blacklist on ENCODE HOT 1
- The whole chromosome is output instead of blacklist HOT 1
- Hg38 v1 HOT 1
- Building custom blacklist HOT 1
- Entire chromosome outputs as high signal HOT 7
- Black listed regions of BosTau8 (Bovine)
- Feature request: package this project for multi-user system HOT 3
- Poorly formatted BED record error HOT 1
- Making blacklist for susScr11 with few input bams HOT 1
- Blacklist Danio rerio release 102
- two different files for human black list regions
- [Inquiry] How to generate blacklist for bat genome?
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from blacklist.