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followers: 11.0 following: 0.0 repos: 53.0 gists: 19.0

Name: Brendan Harris

Type: User

Twitter: brendanjohnh

Location: School of Physics, The University of Sydney

Hello! I am a PhD student in the Complex Systems group (School of Physics) at the University of Sydney, interested in the physical mechanisms of computation and communication in the brain, particularly in the context of visual processing.

I approach this problem using a combination of new methodologies for analyzing non-stationary time series, along with dynamical systems theory, biophysical neural-circuit models, and, of course, the Julia language.

Below you can find some of my recent open-source projects!

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Brendan Harris's Projects

allenbrain.jl

Accessing and analyzing data from the Allen Brain Atlas

allenneuropixels.jl

Wrap some functions from the Python allensdk in Julia

allenneuropixelsbase.jl

Access data from the Allen Institute's open Neuropixels datasets

allensdk

code for reading and processing Allen Institute for Brain Science data

allensdk.jl

Interface with the AllenSDK using PythonCall

allensdk_ben

Workflow for retrieving spatial gene-expression data from the Allen Institute's Mouse Brain Atlas

aperiodicsurrogates.jl

AperiodicSurrogates

autohctsa

Simple hctsa for file-by file calculations on the cluster

botocore

The low-level, core functionality of boto 3.

brainharmonic

BrainHarmonics project repository for the Brainhack Australasia 2021

brendanjohnharris

brendanjohnharris.github.io

cantata

Qt5 Graphical MPD Client

catch22

catch22: CAnonical Time-series CHaracteristics

catch22.jl

Evaluate catch22 time-series features in Julia

clustertools

criticality

Simulate bifurcating dynamical systems, run hctsa and find the most useful features for predicting control parameters.

dandiarchive.jl

Reproduce DANDI cli functionality in Julia

dimensionaldata.jl

Named dimensions and indexing for julia arrays and other data

distributed_hctsa

Running hctsa on a cluster (pbs)

foresight.jl

A Makie theme

generalized-phase

generalizedphase.jl

Implement mullerlab/generalized-phase in Julia

gr_assignment1

hctsa

Highly comparative time-series analysis code repository

julia-vscode

Julia extension for Visual Studio Code

lowrankmodels.jl

LowRankModels.jl is a julia package for modeling and fitting generalized low rank models.

m2docgen

A program that converts .m files into html files and creates a structured xml file compatible with the matlab documentation.

makie.jl

Visualizations and plotting in Julia

modulationindices.jl

Modulation indices as time-series features

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