brendelgroup Goto Github PK
Name: Brendel Group
Type: Organization
Location: Indiana University, Bloomington, IN, USA
Blog: brendelgroup.org
Name: Brendel Group
Type: Organization
Location: Indiana University, Bloomington, IN, USA
Blog: brendelgroup.org
Integrated toolkit for analysis and evaluation of annotated genomes
Code for rice genome analyses (but not necessarily only rice)
Handbook for Brendel Group students, postdocs, and staff
A portal to our collection of Singularity/Apptainer definition and image files
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Brendel Group - github.io presence
Bisulfite-seq data Workflow Automation Software and Protocols
R functions and scripts to process output from the BWASP workflow
code developed for the analysis of the Rice 3000 Genomes project data
Fundamental Models and Algorithms in Bioinformatics
Workflows for genome alignment chain file selection and annotation tasks
Sensitive spliced-alignment of cDNAs or proteins
GoRAMPAGE - a workflow for promoter detection by 5'-read mapping
Computational workflows for STRIPE-seq data analyses
HymHub is now GenHub
Procedures and data for the iLoci study described in Standage, Lai and Brendel (2022)
Supplemental documentation for the iLocus paper
Motif set Reduction and Validation (MoVRs) - a workflow for the derivation of genome-wide DNA motif detection and vetting
Evaluation and annotation of assembled transcripts
Polistes dominula genome project, a collaboration between the Insect Sociogenomics Lab at Iowa State University and the Computational Genome Science Lab at Indiana University
Selective and Recursive local Assembler
Targeted reference-guided genome assembly for comparative rice genomics
Scripts and workflows for transcription start region (TSR) exploration
Promoter identification from diverse types of large-scale TSS profiling data
Code for the xGDBvm iPlant Atmosphere enabled genome annotation platform
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.