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bricolage

Experimental Models of Gene Regulatory Evolution

causalinfo

Exploring Information Measures on Causal Graphs

clint

Python Command-line Application Tools

conda-auto-env

Automatically activate a conda environment when entering a folder with an environment.yml file

conrad

A minimalist simulation of evo-devo

cython-hybrid-vigor

Some simple examples of mixing python and C/C++ using cython

dotgit

Dotfiles

epistemic-landscapes

Simulating the exploration of Epistemic Landscapes

fastapi-celery

Minimal example utilizing fastapi and celery with RabbitMQ for task queue, Redis for celery backend and flower for monitoring the celery tasks.

ivim

Vim on the iPad with ivim and working copy

mds-article

A minimal article class for LaTeX

nanobind

nanobind — Seamless operability between C++17 and Python

omnifocus-scripts

Scripts for use with OmniFocus

overleaf-test

pandoc-templates

Templates for pandoc

partitionfinder

PartitionFinder discovers optimal partitioning schemes for DNA sequences.

patsylearn

Patsy Adaptors for Scikit-learn

pheasant

Documentation tool for Markdown conversion by Jupyter client

phyml

PhyML -- Phylogenetic estimation using (Maximum) Likelihood

pybind11-debugging

Testing and debugging pybind11 features

pymuller

Muller plot generation in Python

pymunk

pymunk is a easy-to-use pythonic 2d physics library that can be used whenever you need 2d rigid body physics from Python

pytest.vim

Runs your UnitTests with py.test displaying red/green bars and errors

pytikz

A Python interface to TikZ

pytreatments

This is what I use to run my discrete simulations like an experiment.

pyxtensor

pybind11 details for xtensor

standard-raxml

tigger

Tigger: An experiment in hybrid programming for phylogenetics

treeswift

TreeSwift: Fast tree module for Python 2 and 3

unite-outline

outline source for unite.vim