Comments (5)
We are using the bundle mode by default now as it is faster in most use cases. We are keeping the synapse push mode as a user preference, therefore this issue stays open. But it is only relevant it we don't use bundles AND can't use atomics (#78). It has therefore low priority for now.
from brian2cuda.
first approach: not bitonic sort but instead:
direct paralellization by threadid:postneuronid assignment (and each thread runs through all synapses in the current queue) and use shared memory for the required data, i.e., postneuron index and synapse index
from brian2cuda.
for the finally targeted more advanced approach of sorting of synapses (value array in shared memory) according to postsynaptic neurons (key array in shared memory) for coalesced application of synaptic effects the following code snippet might be very helpful (actually a radixsort instead of a bitonic sort is performed which should be fast enough). note the code relies on https://nvlabs.github.io/cub/classcub_1_1_block_radix_sort.html where also simple/more readable examples are given: http://stackoverflow.com/a/34607511
from brian2cuda.
do this approach onlz if the bundle way is slower... as that one is trivially parallizable in the effect application (given not more than 1 pre post pair)
from brian2cuda.
Check #30, which seems to be the same issue as this one.
from brian2cuda.
Related Issues (20)
- Call reset kernel only with as many threads as there are spiking neurons (not as there are neurons in total)
- Refactor benchmarking scripts and update generated plots
- Check if storing the size of synapse groups is necessary? HOT 1
- Needs patch to run with Brian 2.4.2 HOT 2
- Optimize `StateMonitor`
- Impelement brian2cuda preference file support
- Copy all eventspace counters to host efficiently at each time step
- Investigate and document performance effects when working with `Subgroup`s HOT 1
- Consider partitioning eventspaces when using `Subgroup`s HOT 4
- Optimize `PopulationRateMonitor`
- Fix `SpikeMonitor` for `Subgroup`s HOT 1
- Optimize our `SpikeMonitor` for `Subgroups`
- Refactor test suite scripts
- Fix `ReferencError` in spatialneuron tests HOT 3
- Fix memory leak when having multiple `run` calls
- Spikes are lost when changing delays between `run` calls HOT 3
- Recent Brian2 update PR broke benchmark scripts HOT 1
- Brian2Cuda Uninstalls Brian2 2.5.1 and Installs 2.4.2 Which Won't Import HOT 3
- Brian2Hears and Brian2CUDA HOT 3
- Optimise brian2CUDA HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from brian2cuda.