Comments (1)
brianstock
commented on September 16, 2024
Yes, you can get all the MCMC draws, see http://brianstock.github.io/MixSIAR/articles/modify_output.html.
If you include individual as a factor then you'll get predicted proportion by individual. Since you already have 2 factors (lake, condition), you can't simply add individual as a 3rd (no good reason, just a limitation when I wrote the code).
We used to have a separate 'individual as RE' option but removed it 8 years ago (277140e). You may be able to piece the necessary code together. The JAGS model part is still on lines 352-360 of write_JAGS_model. If doing this, you need to turn off residual error.
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