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acanthophis

A comprehensive, opinionated plant variant calling pipeline in Snakemake

advanced_python_2019_ebi

Advanced Python Course for PreDoc Training at the EBI

backtranslate

bioconda-recipes

Conda recipes for the bioconda channel.

cluster_vcf_records

Python package to cluster VCF records. Used by gramtools and minos

cortex

reference free variant assembly

ctbl

datasci

dotfiles

gcp

Genotype confidence percentile header-only c++ implementation

genomepy

genes and genomes at your fingertips

gfa-spec

Graphical Fragment Assembly (GFA) Format Specification

googletest

Googletest - Google Testing and Mocking Framework

gramtools

Genome inference from a population reference graph

graph_make_prg

huffmancompression

C++ Implementation of Huffman Coding for file compression

lsf

Snakemake profile for running jobs on an LSF cluster

make_prg

Code to create a PRG from a Multiple Sequence Alignment file

minos

Variant call adjudication

mosaicaligner

Gil's HMM-based alignment/recombination software from Zilversmit et al. 2013.

nf-core-configs

Config files used to define parameters specific to compute environments at different Institutions

pandora

Pan-genome inference with long error-prone sequencing reads

phd-thesis-template

A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)

pqueue

Implementation of a binary heap based priority queue

project_rosalind

purge_dups

haplotypic duplication identification tool

py-cortex-api

Python API for cortex

ratatosk

Hybrid error correction of long reads using colored de Bruijn graphs

recoderlaroue

recoder des algorithmes connus en phylogénie (et autres), dans un objectif pédagogique

research-software

:computer: Instructions, tips and issue tracker for the software on the EBI computing cluster