Comments (3)
konradjk
commented on August 23, 2024
they won't be, but as this is a pretty big breaking change, lets make sure all pipelines that use this package are fixed before we do remove them
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lfrancioli
commented on August 23, 2024
yeah, we need to make sure people know about the change and give them some time. That said, it'll feel nice and clean when we remove those scripts ;)
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ch-kr
commented on August 23, 2024
need to double check with team to make sure no one is using these before we delete
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Related Issues (20)
- Investigate doubleton results (missing duplicates) HOT 22
- KING and pc-relate comparison on v4 test dataset HOT 5
- Error of "TypeError: object of type 'NoneType' has no len()" when doing ancestry classification HOT 2
- Investigate project name changes between v2 and v4 HOT 1
- Investigate project name changes between v2 and v4
- Compute QC MT
- vep_or_lookup_vep failure due to different row types HOT 8
- Prepare code for sites HT release HOT 2
- UnboundLocalError: local variable 'error_rate' referenced before assignment HOT 3
- Replace tqdm with rich_progress_bar in file_utils
- Productionize functions that finalize constraint metrics HOT 1
- Productionize split_context_mt() in the constraint pipeline HOT 1
- Update annotate_freq to accept multiple groupings for stratification HOT 1
- Is there any command can be used to extract de novo mutations HOT 1
- Unable to securely load ancestry RF model HOT 1
- assign_population_pcs() throws InvalidIndexError when input pop_pca_scores is a Dataframe HOT 1
- Update annotate_freq to allow specific additional stratafications
- Build function to join multiple frequency arrays into a single freq array
- Update tim's annotate_freq_and_high_ab_het function to use passed downsamplings
- accessing whole genome vcf for Europeans(Finish and non Finish) HOT 1
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