Comments (1)
- Reading csv files has been addressed #13 in release 2.0
- Optimising parameters with parameter search for auto gates is provided in release 2.0
Short term priorities:
- Increase test coverage
- Implement a multi-instance learning approach similar to CellCNN and @hzc363 https://www.pnas.org/content/117/35/21373
Long term priorities:
- Create a lightweight clone of CytoPy that swaps out mongoengine for PeeWee ORM, granting the use of SQLite for those that cannot host a MongoDB service on their local machine or on Mongo Atlas
- Graphical user interface deployed with Electron JS to expose CytoPy to scientists without training in Python
Porting FlowAI is unnecessary and would add technical debt, therefore it won't be included in any future release
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Related Issues (20)
- AssertionError: Invalid sample: <sample name> not associated with this experiment HOT 11
- Pip backtracking - pip is looking at multiple versions of... HOT 5
- Issue at installation stage HOT 9
- Update docker documentation HOT 2
- Problem with the feature selection method HOT 4
- Error in plotting gates if not all children are labelled HOT 1
- Edit gate not modifying Population HOT 2
- Error in creating ref sample HOT 3
- Improve EllipseGate
- Improve PolygonGate with alphashape
- FlowUtils update HOT 1
- Performance problems of multi process implementation of a block of code HOT 3
- Unable to install with Python 3.8.5 HOT 3
- Issues with saving new project to local database HOT 7
- Unable to install because of KDEpy version conflict HOT 14
- Saving clusters takes forever HOT 1
- Questions about fcs files read and write
- Dataset link is broken
- Installing issue with KDEpy HOT 10
- Numba issue in the CytoPy HOT 1
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