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burtonrj avatar burtonrj commented on May 22, 2024
  1. Reading csv files has been addressed #13 in release 2.0
  2. Optimising parameters with parameter search for auto gates is provided in release 2.0

Short term priorities:

  1. Increase test coverage
  2. Implement a multi-instance learning approach similar to CellCNN and @hzc363 https://www.pnas.org/content/117/35/21373

Long term priorities:

  1. Create a lightweight clone of CytoPy that swaps out mongoengine for PeeWee ORM, granting the use of SQLite for those that cannot host a MongoDB service on their local machine or on Mongo Atlas
  2. Graphical user interface deployed with Electron JS to expose CytoPy to scientists without training in Python

Porting FlowAI is unnecessary and would add technical debt, therefore it won't be included in any future release

from cytopy.

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