anvio

An analysis and visualization platform for 'omics data

awesome-bioinformatics-cn

生物信息学软件，资源和工具库的精选列表

awesome-cheatsheets

超级速查表 - 编程语言、框架和开发工具的速查表，单个文件包含一切你需要知道的东西 :zap:

awesome-phages

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

bacterial_genetics_course_packet

Course packets for Bacterial Genetics and Physiology. Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

bactseq

A nextflow pipeline for performing bacterial RNA-Seq data analysis.

beast

Bacterial Epigenomics Analysis SuiTe

biofx_python

Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

bionitio

Demonstrating best practices for bioinformatics command line tools

caizhaohui

decomppipeline

Large automated pipeline for running the MeDeCom

easystat

EasyStat

managing_your_biological_data_with_python_3

<<Managing Your Biological Data with Python>> wirtten in Python 3

microbiome-analysis-using-r

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

microbiomestatplot

Interpretation and visualization of microbiome charts

rna-seq-analysis

RNAseq analysis notes from Ming Tang

rnaseq-workflow

A repository for setting up a RNAseq workflow

simple-codon-optimizer

Simple Python program to perform codon optimization or heterology calculations.

stat_rethinking_2023

Statistical Rethinking Course for Jan-Mar 2023

tools-microbiome-analysis

A list of R environment based tools for marker gene microbiome data exploration, statistical analysis and visualization

unicycler

hybrid assembly pipeline for bacterial genomes