Comments (4)
Hi @callahantiff - I agree with the summary for the most part. My suggestion is to make the key some identifier unique across the knowledge graph. Could be just an incremented integer unique to each relation with respect to the triple that it occurs in. I like to use 'predicate' for the URIRef that represents the edge relationship (which will likely be from an ontology e.g. RO and not unique), and weight should be 0.0 as you indicated.
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Thanks so much @rkboyce, that's exactly what I needed to know!
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Done! Note that this representation now includes keys for nodes and edges and has a default weight of 0.0
:
- Node key:
str(http://purl.obolibrary.org/obo/CHEBI_35406)
- Relation key: MD5 hash of triple ensures that each key is unique with respect to the triple it occurs in ➞
hash( 'http://purl.obolibrary.org/obo/CHEBI_35406' + 'http://www.w3.org/2000/01/rdf-schema#subClassOf' + 'http://purl.obolibrary.org/obo/CHEBI_29067' )
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Completed as part of #84
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Related Issues (20)
- July 2021 Build -- Delay
- Incorporating Ensmallen -- 🔮 Magic ✨ 🎩
- Script Notebook: OWLNETS_Example_Application.ipynb HOT 1
- New Resource Request: LINCS
- Adding Edge Pattern and Relation Types HOT 3
- requirements.txt HOT 7
- Newline char in node description/definition causes dirty lines in node metadata files HOT 5
- Foreign characters in node labels HOT 18
- Simplify input files -- input yaml HOT 5
- GitHub Actions -- Docker build-push-action failing HOT 3
- Migrate from Google Cloud Container Registry to Artifact Registry
- Create Notebook to Enable pkt use in Efforts like HuBMAP HOT 1
- Create Build Dashboard
- Wiki: Create Endpoint Page
- CI/CD Pipeline: Ensuring Builds Use Most Current Data HOT 3
- Enabling Google GCS Directory Listing HOT 6
- Pheknowlator knowledge graph in OBO format HOT 4
- log directory is not created when pkt_kg is imported HOT 1
- Consider switching to https://identifiers.org/ URI or CURIEs HOT 2
- Create Edge-Type Attribute File HOT 15
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