Comments (10)
tiff should work, that's strange. It's in the allowedExtensions, and should be supported by openslide.
Annotations are in the mongo database, and do not modify the slide file itself.
from distro.
tiff should work, that's strange. It's in the allowedExtensions, and should be supported by openslide.
Annotations are in the mongo database, and do not modify the slide file itself.
from distro.
And another question, after drawing, there will be lines and rectangles on the slides, I wonder where do these lines and rectangles restored? I guess maybe they are images such as png or jpg but actually I cannot find them in the caMicroscope folder or Distro folder. Maybe they are in ca-mongo database?
from distro.
tiff should work, that's strange. It's in the allowedExtensions, and should be supported by openslide.
Annotations are in the mongo database, and do not modify the slide file itself.
And I wonder how to get into the mongo database to see these annotation files. Are there any commands in Ubuntu that can be used to find these files?
from distro.
As for annotations, There are a few options. You can expose the mongo db port and connect outside of the container (do not do so in production), but I usually exec into the container with docker exec -it ca-mongo mongo
Can you try an openslide-show-properties on the image file you're using?
from distro.
from distro.
Is the annotation stored as .wt file?
from distro.
They are stored as augmented geojson documents. From that mongo shell, you can run use camic
as before, then db.mark.count()
to determine how many annotations, and db.mark.find()
to get the data.
from distro.
I've never tried to mess with the wired tiger files or any mongo internals directly in that way. Perhaps you can?
from distro.
Oh! your commands are very useful! Previouly I thought maybe the .wt file is the annotation!
from distro.
Related Issues (20)
- rotate logs HOT 1
- Travis has Issues with Docker and rate limits
- Docker compose fails since additional_links.json file was deleted HOT 1
- Key Generation Portability HOT 1
- Upgrade Google Signon
- Automatic Docker Image Builds on Github HOT 2
- Kubernetes Config HOT 2
- JsonWebTokenError - Issue using Secret Key HOT 1
- A service can not depend on itself HOT 1
- Installation of distro with docker compose fails HOT 5
- google authentication does not work / no other way to add a user? HOT 8
- Seeking for further discussion on adding user in local environment.
- docker-compose -f caMicroscope.yml up command failed to run HOT 8
- Error while uploading a svs file HOT 16
- ca-iip restarting and exitting in a loop, trying to change ownership HOT 2
- GHCR reporting a permission error on pull for public images HOT 1
- Issue with unencoded filepaths for IIP HOT 1
- Issue with file develop.yml HOT 1
- Got Errors on Running Docker Compose Up HOT 2
- Add a messaging bot to keep track of recent meetings with notifications
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from distro.