cbica Goto Github PK

basis

brainmage

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

brainsegmenter

bridgeport

Source for https://www.cbica.upenn.edu/bridgeport and documentation of the GWAS dataset

btmcs

Brain Tumor Modelling Coupled Solver

c3d

Convert3D tool

captk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

captk2.0

captk_centos7

CentOS7 docker image for CaPTk compiles to work around GLIBC issues

cbica.github.io

cbica_toolkit

This is a toolkit with basic functionality to help C++ projects

cmdparser

An easy to use Command Line Parser and Common Workflow Language (CWL) specification creater/reader

cwl-website

www.commonwl.org

dcmqi

dcmqi (DICOM for Quantitative Imaging) is a free, open source library that can help with the conversion between imaging research formats and the standard DICOM representation for image analysis results

deep-libra

deepmedic

Efficient Multi-Scale 3D Convolutional Neural Network for Brain Lesion Segmentation

deepmrseg

deepmrseg-models

deepmrsegapp

deepsea

Automatic 3D whole breast segmentation in breast MRI

dlicv

A repository that allows users to apply the DLICV method to their brain imaging data.

dlmuse

A repository that allows users to apply the DLMUSE method to their brain imaging data.

figuregenerator

This helps creating high quality figures for use in manuscripts and presentations.

gandlf_experiments_template

gbmsurvival_2023

glistr

Segmentation algorithm. DEPRECATED

glistrboost

GLISTRboost repo for development

greedy

Very fast greedy diffeomorphic registration code

hausdorffcli

Simple CLI that generates Hausdorff-95th percentile for ground truth and input masks

historeg

Framework for registration of sequential digitized histology slices