celinereisser Goto Github PK

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bioinfo_tools

A little set of commands to manipulate NGS files

cumulated-net-conn

daphnia_snp

dupgen_finder

A pipeline used to identify different modes of duplicated gene pairs

ecope

Labex-CORAIL: Impact des techniques d'élevage des huîtres perlières sur le sex ratio, la diversité génétique, et la provenance des naissains collectés.

evotox

Evolutionary toxicology by anthropogenic pollution in invasive crayfish population

gambic

Scripts used for building the adlut liver transcriptome of Gambusia holbrooki, and fuunctionnaly annotate the genome of G. holbrooki using this transcriptome.

gamma

Labex Mer - Corail : Adaptation et plasticité de la réponse à la température chez Pinctada margaritifera : écotypes des Gambiers et des Marquises

go_enrichment

Transcripts annotation and GO enrichment Fisher tests

goatools

Python scripts to find enrichment of GO terms

gwas_with_r

R code performing Genome-Wide-Association-Study and following a preset segregation model. The fit of the segregation model is tested on the dataset using a Chi2 Test.

pearl_oyster_colour_population_genomics

persist

Codes and datasets used in the LabEx CORAIL Project PERSIST (2017).

proovread_debug_pacbio

sub-sample of pacbio data for proovread debugging

qiime2_pipeline

Pipeline to perform meta barcoding analysis using QIIME2 program

simrad

Using the R package SimRAD to simulate a genome and perform enzymatic single digest and double digest, to predict the number of loci one can obtain.

te_annotation

Pipeline for TE annotation of the Pinctada margaritifera genome

wgs_pipeline

Pipeline to analyze whole genome sequencing DNA reads from Illumina HiSeq platform