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agssy

Amazon Gene Search System

ampspherefrontend

annopipe

Tired to have to search and parse your files in long processes? Do you still use several scripts to make annotation in your protein sequences? Using a single command annopipe will give you a parsed annotation using 6 databases, besides save your time. For more information look into the repository.

beaf

BEAF - Referenced Binning Engine for Autonomous Finding

big-data-biology_org

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics_scripts

Scripts UBC

caco

CaCo: A program for predicting carbon source competition and ecological type of interaction from genomes.

dummybinner

Dummy binner of contigs and reads that uses kmer frequencies, GC content and coverage. Few dependencies, basic results.

easel

Sequence analysis library used by Eddy/Rivas lab code

gmsc-mapper

interactivenn

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

lsabgc

lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

macrel

Predict AMPs in (meta)genomes and peptides

macrel2020benchmark

mapreduce

megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

mummer

Mummer alignment tool

opus_pipe

Protein operational taxonomic units clustering pipeline

poutpourri_tools

This repository contains many scripts of general usage and tools which turns the bioinformatic daily task really simpler. Applications involves since from genomics, metagenomics and transcriptomics. Hope that it help you. If you use, you cite. ;)

ppgbiotec_bioinformatica_i

This repository contains the scripts for the discipline of Bioinformatics applied in the postgrad course in Biotechnology

preanticov

Identifying anti-coronavirus peptides by incorporating different negative datasets and imbalanced learning strategies

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

python_biocientistas

Esse repositório contém informação e dados para desenvolvimento da disciplina de python aplicada no PPGGERN/UFSCar - 2024/01

santosjunior_torres_2024_ampsphere_v1

Brings figures and files used in the production of the AMPSphere manuscript

scnic

Sparse Cooccurence Network Investigation for Compositional data

simgenes

Simulate random gene sequences controlling for real parameters, such as GC content.

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