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Chad Laing's Projects

feht icon feht

Predictive marker discovery for groups; binary data, genomic data (single nucleotide variants), arbitrary character data.

hopm icon hopm

Omnilog data aggregation

paulownia icon paulownia

PAULOWNIA is a python wrapper around BLAST (http://blast.ncbi.nlm.nih.gov/Blast.cgi), the alignment program MAFFT (http://mafft.cbrc.jp/alignment/software/) and the the fast neighbor-joining method implemented in clearcut (http://bioinformatics.hungry.com/clearcut/). The purpose of the script is to efficiently add a new genome to an existing alignment, based on a set of query sequences.

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