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ChangwenXu98 avatar ChangwenXu98 commented on June 8, 2024

Hi @liberty-1776, thanks for raising the issue. Your suggestion is valuable, and we've updated the code. Meanwhile, even though the square brackets are included, the effect is just having a '[' after the start token '' and a ']' before the end token '', so we believe that the performance of the pretrained model will be almost the same after removing the square brackets. And the downstream performance should be the same as the results we report in paper (if not better) since the tokens from the downstream sequences do not have such issue.

from transpolymer.

liberty-1776 avatar liberty-1776 commented on June 8, 2024

Yeah, that's right

from transpolymer.

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