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ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

ambic-epigenome

AMBIC Epigenomics project analysis

awesome-ai-ml-dl

Awesome Artificial Intelligence, Machine Learning and Deep Learning as we learn it. Study notes and a curated list of awesome resources of such topics.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

book

Compiled and pretty version of labs

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

deeplearning-biology

A list of deep learning implementations in biology

dlaicourse

Notebooks for learning deep learning

fit-sne

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

foodborne_classifier

The classifier used in the http://foodborne.smartchicagoapps.org/ application.

genbioconductor

Materials for Genomics Data Science: Introduction to Bioconductor

genstats

Statistics course for JHU Genomic Data Science Sequence

industry-machine-learning

A curated list of applied machine learning and data science notebooks and libraries across different industries.

labs

Rmd source files for the HarvardX series PH525x

pcawg-colour-palette

For mapping terms to standardized colours

proc10xg

processing 10x genomics reads

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scrna.seq.course

Analysis of single cell RNA-seq data course

seurat

R toolkit for single cell genomics

single-cell-3prime-paper

state-of-the-art-result-for-machine-learning-problems

This repository provides state of the art (SoTA) results for all machine learning problems. We do our best to keep this repository up to date. If you do find a problem's SoTA result is out of date or missing, please raise this as an issue or submit Google form (with this information: research paper name, dataset, metric, source code and year). We will fix it immediately.

t-sne-heatmaps

Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq

teachingexamples

BLAST & GATK (eXome Analysis Pipeline) examples used for teaching purposes

virgilio

Your new Mentor for Data Science E-Learning.