Comments (2)
Nadine;
Thanks much for the report and apologies about the issues with Python 3.7 compatibility. I pushed a new release (0.6.5) of bcbio.GFF that fixes this issue and should hopefully work cleanly for you. Please let us know if you run into any other problems.
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Thank you very much!
I will try it.
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Related Issues (20)
- GFF parsing fails with most recent version of BioPython HOT 8
- Regarding gff2_to_gff3.py script
- ValueError: need more than 0 values to unpack HOT 1
- Did not find remapped ID location: HOT 2
- licence? HOT 1
- Need Nucleotide or protein alphabet HOT 2
- issue with reduce HOT 5
- Python 3 compatibility issue + fix HOT 3
- IndexError with NCBI gff
- Any chance a new release will be made sometime soon?
- glimmergff_to_proteins.py / Reordering Fasta file
- glimmergff_to_proteins.py / Alternative Codon Table
- Bug in v.0.6.8 in `GFF.parse`: `AttributeError: 'NoneType' object has no attribute 'find'` HOT 1
- Error in GFFParser: UnknownSeq is deprecated in biopython 1.81 HOT 7
- Error in GFFParser: TypeError: SeqFeature.__init__() got an unexpected keyword argument 'strand' HOT 1
- Importing BCBio.GFF suppresses Biopython warnings in external code HOT 4
- Error in GFFParser: AttributeError: module 'Bio.SeqFeature' has no attribute 'SimpleLocation'
- Warning in GFFParser: BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use Seq(None, length) instead.
- GFF.parse modifies input order of base_dict
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