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bundle-net

Behavioural and Dynamic Learning Network (BunDLe Net) is an algorithm to learn meaningful coarse-grained representations from time-series data. It maps high-dimensional data to low-dimensional space while preserving both dynamical and behavioural information. It has been applied, but is not limited to neuronal manifold learning.

course-content

NMA Computational Neuroscience course

fdnc_neuron_id

A new approach to tracking and identifying neurons both within and across individual C. elegans.

geophysics_control

imutils

Fork of Ulises' imutils repository. This is the main one the lab should use

pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

remove_cycle_from_skeleton

speech_recognition-callback

Speech recognition module for Python, supporting several engines and APIs, online and offline.

tifffile

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

ts_spatial_filter

time series spatial filter