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Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
Deep representation learning for disease prediction based on microbiome data
DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.
A Guide for Feature Engineering and Feature Selection, with implementations and examples in Python.
TensorFlow Neural Machine Translation Tutorial
The second version of the Kraken taxonomic sequence classification system
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Representation learning for link prediction within social networks
A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if anything leaves in the future.
Automated machine learning model building pipeline for microbiome data
Deconstructing a microbial interaction network
Microbiome repository
The Microbiome Regression-based Kernel Association Test for multi-categorical (nominal or ordinal) data
Nested cross-validation for unbiased predictions. Can be used with Scikit-Learn, XGBoost, Keras and LightGBM, or any other estimator that implements the scikit-learn interface.
This repo stores the codes for assessing the poultry cecum response for antibiotic growth promoter and a natural alternatvie.
pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, in microarray expression data.
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
my solutions to problems from Rosalind.
Scalable creating/updating of metagenome profiling databases
Triplot: Instance- and data-level explanations for the groups of correlated features.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.