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analytics_vidhya

Codes related to activities on AV including articles, hackathons and discussions.

ascat

ASCAT copy number R package

ascatngs

Somatic copy number analysis using paired end wholegenome sequencing

awesome-d3

A list of D3 libraries, plugins and utilities

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

baidupcs

百度网盘命令行工具。The terminal utility for Baidu Network Disk.

bam-readcount

count DNA sequence reads in BAM files

bamtobw

Convert BAM files to bigWig files with a simple command

bamtools

C++ API & command-line toolkit for working with BAM data

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bedtools2

A powerful toolset for genome arithmetic.

bhtsne

Barnes-Hut t-SNE

biblatex-gb7714-2015

A biblatex implementation of the GB/T7714-2015 bibliography style || GB/T 7714-2015 参考文献著录和标注的biblatex样式包

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

caffe

Caffe: a fast open framework for deep learning.

caffe2

Caffe2 is a lightweight, modular, and scalable deep learning framework.

cage-dev

CRISPR KO Analysis based on Genomic Editing data

cairosvg

CairoSVG is a SVG converter based on Cairo. It can export SVG files to PDF, PostScript and PNG files.

capsid-pipeline

Computational Pathogen Sequence IDentification (CaPSID) Pipeline

carthage

A simple, decentralized dependency manager for Cocoa

chainer-dcgan

Chainer implementation of Deep Convolutional Generative Adversarial Network

char-rnn

Multi-layer Recurrent Neural Networks (LSTM, GRU, RNN) for character-level language models in Torch

clif

Wrapper generator foundation to wrap C++ for Python and other languages using LLVM.

cpinfer

A pipeline for inferring mutation clonal population structure from NGS data

cufflinks

d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

deeppath

Classification of Lung cancer slide images using deep-learning

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

diamond

Accelerated BLAST compatible local sequence aligner.

dlforgenomics

Review Paper: Deep Learning Applications for Genomics