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ansible

Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applications— automate in a language that approaches plain English, using SSH, with no agents to install on remote systems.

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

bioformats2raw

Bio-Formats whole slide imaging to raw format converter

boto

Python interface to Amazon Web Services

build-infra

Infrastructure for super-project builds

cellprofiler

CellProfiler is open-source cellular image analysis software.

cidre

A general illumination correction method for optical microscopy.

corgi

Cool Organisation Redmine GitHub Integration

django

The Web framework for perfectionists with deadlines.

figure

An OMERO.web app for creating Figures from images in OMERO

flask-security

Quick and simple security for Flask applications

flask-wtf

Simple integration of Flask and WTForms, including CSRF, file upload and Recaptcha integration.

gradle-js-plugin

Gradle plugin for working with JS

homebrew

The missing package manager for OS X.

homebrew-duplicates

intermine-ws-python

The InterMine python webservice

isyntax2raw

iSyntax to raw format converter

jxrlib

jzarr

A Java implementation of the API offered by the Python zarr package

libjpeg-turbo

git-svn mirror of libjpeg-turbo

matplotlib-toys

OMERO matplotlib toy scripts

n5

Not HDF5

n5-zarr

Zarr filesystem backend for N5

ngff-converter

NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF

ome-documentation

Sphinx-based documentation for the Open Microscopy Environment

ome-omero-roitool

OME and OMERO ROI tool

ome-types

native Python dataclasses for the OME data model

omero-blitz

Gradle project containing Ice remoting code for OMERO

omero-certificates

OMERO server certificate management plugin

omero-cli-render

OMERO command-line tool for rendering