christopher-hakkaart Goto Github PK

astro

Playing with astro

bench

Benchmark variant calls

christopher-hakkaart

My repository.

christopher-hakkaart.github.io

Astro template

customising-nfcore-workshop

Customising nf-core workshop

dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

fluff

genomefiles

Meta-chromosome genome files and scripts

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nanogenvar

Pipeline for variant calling nanopore data.

nanoseq

Nanopore demultiplexing, QC and alignment pipeline

nextflow-developer-workshop

Best practices for developing your pipelines with Nextflow and nf-core

nf-co.re

Code and files for the main nf-core website.

nf-core-demo

nf-workshops

Map of Nextflow and nf-core workshops

nfcoreworkshoptesting

testing and materials development for AusBioCommons customising nf-core workshop 2023

old-demo

Demo nf workflow for unlocking nf-core workshop

poc

Proof of concept pipeline

poc-training

3 hour Nextflow training

pocrnaseq

Proof of concept rnaseq pipeline

rewarewaannotation

Nextflow pipeline for the annotation of the rewarewa (Knightia excelsa) genome.

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

stable-diffusion

A latent text-to-image diffusion model

stable-diffusion-nf

Proof-of-concept pipeline for stable diffusion in Nextflow and Tower

summit-website

templateswebinar

Templates webinar

test-data

Files for dev testing