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awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

brain_genomic_data

Brain-related -omics data

brainseq_phase1

code from brainseq phase 1 paper

brainseq_phase2

BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium

coxgwas

deglist

The R code was supplied to analyze the differential expression gene list in age, gender and brain region

deglist.r

The R code was supplied to analyze the differential expression gene list in age, gender and brain region

devrhesuslmd

Non-human primate brain development gene expression

diagrammer

Graph and network visualization using tabular data in R

drams

A tool to Detect and Re-Align Mixed-up Samples based on multi-omics data

eigensoft

principal components population genetics analysis on linux

flair

Full-Length Alternative Isoform analysis of RNA

fusion_twas

methods for functional summary-based imputation

genex-fb2

genstats

Statistics course for JHU Genomic Data Science Sequence

gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

jcpackage

Adjust for positional and batch effects using ComBat

lab-pipelines

这里是所有分析汇总流程

ldsc

LD Score Regression (LDSC)

macrophage-tuqtls

numetrrbs

outrigger

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

pec_dev

psichomics

Interactive R package to quantify, analyse and visualise alternative splicing data

psychencode

qtltools

A complete tool set for molecular QTL discovery and analysis

recharts

An R Interface to ECharts

rna-seq-analysis

RNAseq analysis notes from Ming Tang

sczewas