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Hi, I'm Chris šŸ‘‹

I am an instructor in psychiatry at Massachusetts General Hospital / Harvard Medical School, with a PhD in biostatistics from UC Berkeley. I work in Jordan Smoller's Center for Precision Psychiatry.

Chris Kennedy's Projects

acic-tmle-2018 icon acic-tmle-2018

Targeted learning entry for the Atlantic Causal Inference Conference's 2018 data challenge

brats17 icon brats17

Brain tumor segmentation for MICCAI 2017 BraTS challenge

ck37r icon ck37r

R functions for project setup, data cleaning, machine learning, SuperLearner, parallelization, and targeted learning.

clinsent icon clinsent

Estimate sentiment in clinical notes via keywords or deep learning models

concise-r icon concise-r

A concise introduction to R programming and data analysis

coral-ordinal icon coral-ordinal

Tensorflow Keras implementation of ordinal regression using consistent rank logits (CORAL) by Cao et al. (2019)

crm_report icon crm_report

Constituent statistics report for Blue State Digital CRM, for new media teams.

darwin-py icon darwin-py

Library and commandline tool for managing datasets on darwin.v7labs.com

drtmle icon drtmle

Nonparametric estimators of the average treatment effect with doubly-robust confidence intervals and hypothesis tests

embarcadero icon embarcadero

šŸŒ²šŸŒ‰ BART species distribution models šŸŒ‰ šŸŒ²

featurerank icon featurerank

Ensemble feature ranking for SuperLearner variable selection

hopach icon hopach

This is a read-only mirror of the Bioconductor SVN repository. PackageĀ Homepage:Ā http://bioconductor.org/packages/devel/bioc/html/hopach.html Contributions:Ā http://www.stat.berkeley.edu/~laan/, http://docpollard.org/. BugĀ Reports:Ā https://support.bioconductor.org/p/new/post/?tag_val=hopach.

hpc-savio-xsede icon hpc-savio-xsede

Multicore and multi-node parallel R computation via SLURM on the Savio cluster at UC Berkeley, plus XSEDE

htestimate icon htestimate

Horvitz-Thompson estimator for RCTs, with Joel Middleton

iml icon iml

iml: interpretable machine learning R package

jomo icon jomo

:exclamation:Ā ThisĀ isĀ aĀ read-onlyĀ mirrorĀ ofĀ theĀ CRANĀ RĀ packageĀ repository. jomoĀ ā€”Ā MultilevelĀ JointĀ ModellingĀ MultipleĀ Imputation

ltmle icon ltmle

Longitudinal Targeted Maximum Likelihood Estimation package

machine-learning-in-r icon machine-learning-in-r

Workshop (6 hours): preprocessing, cross-validation, lasso, decision trees, random forest, xgboost, superlearner ensembles

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