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bio_project

bioinformatics_functions

A repo for random bioinformatic functions I want to re-use later

biol5153

My repository for assignment submission for course BIOL 5153, Practical Programming for Biologists at the University of Arkansas.

clstacy.github.io

My implementation of the Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

configs

Config files used to define parameters specific to compute environments at different Institutions

genomicdataanalysis

Repository for exercises made for a Genomic Data Analysis course

genomicdataanalysis_fa23

Files for course activities

gropredict

index

multipool

This fork contains an update of the MULTIPOOL High-resolution genetic mapping for pooled sequencing with Python 2 code updated to Python 3

nhanes

Using Bayesian methods to analyze recent NHANES data

nlp-papermills

NLP analysis of pdfs of research articles that may not be legitimate

paralogs

Visualizing Differential Expression of Paralogs in KEGG Gene Pathways

prepsrnaseq

A re-analysis of data from http://dx.doi.org/10.1186/s12864-020-6673-2

scicomp4bio_fa22

A home for my work in Scientific Computing for Biologists course at the University of Arkansas. Fall, 2022

weightedspectraldifference

Calculate WSD of Circular Dichroism Curves across pH and Temperature gradients

yeastkodoublingtimes

Available at: https://clstacy.github.io/yeastKODoublingTimes/ . Doubling time estimates for haploid KO library, data from doi: 10.1093/g3journal/jkac240